Analyzing COVID-19

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Analyzing COVID-19

2

Sequences producing significant alignments:
 reports Description Max Score Total Score Query-Cover E-Value % Accession
Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome
 55221 55221 100% 0.0 100.00% NC_045512.2
Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome
 55221 55221 100% 0.0 100.00% MN908947.3
Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-03/2019, complete genome
 55208 55208 99% 0.0 100.00% MT019531.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/235/human/2020/CHN, complete genome
 55199 55199 100% 0.0 99.99% MT135044.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/231/human/2020/CHN, complete genome
 55199 55199 100% 0.0 99.99% MT135042.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/105/human/2020/CHN, complete genome
 55199 55199 100% 0.0 99.99% MT135041.1
Severe acute respiratory syndrome coronavirus 2 isolate WIV04, complete genome
 55199 55199 99% 0.0 100.00% MN996528.1
Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-01/2019, complete genome
 55197 55197 99% 0.0 99.99% MT019529.1
Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-04/2019, complete genome
 55197 55197 99% 0.0 100.00% MT019532.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/233/human/2020/CHN, complete genome
 55193 55193 100% 0.0 99.98% MT135043.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Yunnan-01/human/2020/CHN, complete genome
 55193 55193 100% 0.0 99.98% MT049951.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV WHU01, complete genome
 55180 55180 99% 0.0 100.00% MN988668.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV WHU02, complete genome
 55180 55180 99% 0.0 100.00% MN988669.1
Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-05/2020, complete genome
 55179 55179 99% 0.0 100.00% MT019533.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA8/2020, complete genome
 55177 55177 99% 0.0 100.00% MT106053.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA9/2020, complete genome
 55177 55177 99% 0.0 100.00% MT118835.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA2/2020, complete genome
 55173 55173 99% 0.0 99.99% MN994468.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-005b_2020, complete genome
 55171 55171 99% 0.0 99.98% MN975262.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA5/2020, complete genome
 55171 55171 99% 0.0 99.99% MT027064.1
Severe acute respiratory syndrome coronavirus 2 isolate SNU01, complete genome
 55171 55171 100% 0.0 99.97% MT039890.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/IQTC01/human/2020/CHN, complete genome
 55166 55166 99% 0.0 99.99% MT123290.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-WA1/2020, complete genome
 55166 55166 99% 0.0 99.99% MN985325.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-WA1-A12/2020, complete genome
 55166 55166 99% 0.0 99.99% MT020880.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-WA1-F6/2020, complete genome
 55166 55166 99% 0.0 99.99% MT020881.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA3/2020, complete genome
 55166 55166 99% 0.0 99.99% MT027062.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA4/2020, complete genome
 55166 55166 99% 0.0 99.99% MT027063.1
Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-02/2019, complete genome
 55162 55162 99% 0.0 99.98% MT019530.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/IQTC02/human/2020/CHN, complete genome
 55160 55160 99% 0.0 99.99% MT123291.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-AZ1/2020, complete genome
 55160 55160 99% 0.0 99.99% MN997409.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA7/2020, complete genome
 55160 55160 99% 0.0 99.99% MT106052.1
Wuhan seafood market pneumonia virus genome assembly, chromosome: whole_genome
 55156 55156 99% 0.0 100.00% LR757996.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-WI1/2020, complete genome
 55156 55156 99% 0.0 99.99% MT039887.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-MA1/2020, complete genome
 55156 55156 99% 0.0 99.98% MT039888.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-IL1/2020, complete genome
 55153 55153 99% 0.0 99.97% MN988713.1
Wuhan seafood market pneumonia virus genome assembly, chromosome: whole_genome
 55151 55151 99% 0.0 99.99% LR757995.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/01/human/2020/SWE, complete genome
 55151 55151 99% 0.0 99.98% MT093571.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/SP02/human/2020/BRA, complete genome
 55149 55149 99% 0.0 99.99% MT126808.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/NTU01/2020/TWN, complete genome
 55149 55149 99% 0.0 99.99% MT066175.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/NTU02/2020/TWN, complete genome
 55149 55149 99% 0.0 99.99% MT066176.1
Severe acute respiratory syndrome coronavirus 2 SARS-CoV-2/Hu/DP/Kng/19-020 RNA, complete genome
 55147 55147 99% 0.0 100.00% LC528232.1
Severe acute respiratory syndrome coronavirus 2 SARS-CoV-2/Hu/DP/Kng/19-027 RNA, complete genome
 55145 55145 99% 0.0 99.99% LC528233.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA1/2020, complete genome
 55143 55143 99% 0.0 99.98% MN994467.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-IL2/2020, complete genome
 55143 55143 99% 0.0 99.98% MT044257.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/WH-09/human/2020/CHN, complete genome
 55143 55239 99% 0.0 100.00% MT093631.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-TX1/2020, complete genome
 55143 55143 99% 0.0 99.98% MT106054.1
Wuhan seafood market pneumonia virus genome assembly, chromosome: whole_genome
 55142 55142 99% 0.0 99.99% LR757998.1
Severe acute respiratory syndrome-related coronavirus isolate SARS-CoV-2/IQTC04/human/2020/CHN, complete genome
 55140 55207 99% 0.0 99.99% MT123292.1
Severe acute respiratory syndrome coronavirus 2 isolate Australia/VIC01/2020, complete genome
 55140 55140 100% 0.0 99.96% MT007544.1
Severe acute respiratory syndrome-related coronavirus isolate SARS-CoV-2/IQTC03/human/2020/CHN, complete genome
 55134 55255 99% 0.0 99.98% MT123293.1
Severe acute respiratory syndrome coronavirus 2 isolate WIV06, complete genome
 55130 55130 99% 0.0 100.00% MN996530.1
Severe acute respiratory syndrome coronavirus 2 isolate WIV07, complete genome
 55125 55125 99% 0.0 99.99% MN996531.1
Severe acute respiratory syndrome coronavirus 2 isolate WIV05, complete genome
 55116 55116 99% 0.0 99.99% MN996529.1
Severe acute respiratory syndrome coronavirus 2 isolate HZ-1, complete genome
 55092 55092 99% 0.0 100.00% MT039873.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-002a_2020, complete genome
 55084 55084 99% 0.0 99.99% MN938384.1
Severe acute respiratory syndrome coronavirus 2 isolate WIV02, complete genome
 55066 55066 99% 0.0 99.99% MN996527.1
Severe acute respiratory syndrome coronavirus 2 isolate SARS0CoV-2/61-TW/human/2020/ NPL, complete genome
 55046 55046 99% 0.0 100.00% MT072688.1
Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV/USA-CA6/2020, complete genome
 55027 55027 99% 0.0 99.92% MT044258.1
Severe acute respiratory syndrome coronavirus 2 isolate nCoV-FIN-29-Jan-2020, partial genome
 39792 54758 99% 0.0 99.85% MT020781.1
Bat SARS-like coronavirus isolate bat-SL-CoVZC45, complete genome
 26943 35336 95% 0.0 89.12% MG772933.1
Bat SARS-like coronavirus isolate bat-SL-CoVZXC21, complete genome
 22223 35276 94% 0.0 88.65% MG772934.1
SARS coronavirus ZS-B, complete genome
 15213 22600 88% 0.0 82.34% AY394996.1
SARS coronavirus ZS-A, complete genome
 15213 22600 88% 0.0 82.34% AY394997.1
SARS coronavirus ZS-C, complete genome
 15213 22564 88% 0.0 82.34% AY395003.1
SARS coronavirus SZ3, complete genome
 15202 22529 88% 0.0 82.33% AY304486.1
SARS coronavirus SZ16, complete genome
 15202 22531 88% 0.0 82.33% AY304488.1
Bat SARS-like coronavirus isolate Rs4231, complete genome
 15176 22534 91% 0.0 82.30% KY417146.1
Coronavirus BtRs-BetaCoV/YN2018B, complete genome
 15176 22618 91% 0.0 82.32% MK211376.1
SARS coronavirus BJ182a, complete genome
 15169 22509 88% 0.0 82.30% EU371560.1
SARS coronavirus BJ182b, complete genome
 15169 22509 88% 0.0 82.30% EU371561.1
BtRs-BetaCoV/YN2013, complete genome
 15163 21673 85% 0.0 82.29% KJ473816.1
Coronavirus BtRs-BetaCoV/YN2018C, complete genome
 15149 22403 88% 0.0 82.29% MK211377.1
Bat SARS-like coronavirus isolate Rf4092, complete genome
 15134 22372 86% 0.0 82.26% KY417145.1
Coronavirus BtRs-BetaCoV/YN2018A, complete genome
 15117 22368 88% 0.0 82.26% MK211375.1
SARS-related bat coronavirus isolate Anlong-111 orf1ab polyprotein and orf1a polyprotein genes, complete cds
 15084 16332 64% 0.0 82.35% KF294455.1
Bat coronavirus Cp/Yunnan2011, complete genome
 15043 21834 86% 0.0 82.18% JX993988.1
SARS-related coronavirus isolate F46, complete genome
 14999 22265 87% 0.0 82.13% KU973692.1
BtRs-BetaCoV/HuB2013, complete genome
 14970 22339 87% 0.0 82.20% KJ473814.1
Bat coronavirus (BtCoV/279/2005), complete genome
 14916 22163 87% 0.0 82.16% DQ648857.1
Bat coronavirus Rp/Shaanxi2011, complete genome
 14892 21819 88% 0.0 82.00% JX993987.1
SARS-related bat coronavirus isolate Longquan-140 orf1ab polyprotein, spike glycoprotein, envelope protein, membrane protein, and nucleocapsid protein genes, complete cds
 14759 23767 91% 0.0 81.89% KF294457.1
Coronavirus BtRl-BetaCoV/SC2018, complete genome
 14731 21836 87% 0.0 82.02% MK211374.1
BtRf-BetaCoV/SX2013, complete genome
 14722 21360 87% 0.0 81.82% KJ473813.1
Bat SARS coronavirus HKU3-7, complete genome
 14683 21958 88% 0.0 81.82% GQ153542.1
BtRf-BetaCoV/JL2012, complete genome
 14683 21067 86% 0.0 81.79% KJ473811.1
BtRf-BetaCoV/HeB2013, complete genome
 14683 21261 86% 0.0 81.79% KJ473812.1
Bat SARS coronavirus HKU3-8, complete genome
 14678 21996 88% 0.0 81.82% GQ153543.1
Bat coronavirus (BtCoV/273/2005), complete genome
 14556 21386 87% 0.0 81.66% DQ648856.1
Bat SARS coronavirus Rf1, complete genome
 14556 21394 87% 0.0 81.66% DQ412042.1
Bat SARS coronavirus HKU3-12, complete genome
 14550 21830 88% 0.0 81.68% GQ153547.1
SARS-related bat coronavirus isolate Jiyuan-331 orf1ab polyprotein gene, complete cds
 14539 15829 66% 0.0 81.66% KF294456.1
bat SARS coronavirus HKU3-2, complete genome
 14512 21810 88% 0.0 81.64% DQ084199.1
Bat SARS coronavirus HKU3-4, complete genome
 14506 21797 88% 0.0 81.63% GQ153539.1
Bat SARS coronavirus HKU3-5, complete genome
 14506 21791 88% 0.0 81.63% GQ153540.1
Bat SARS coronavirus HKU3-11, complete genome
 14501 21780 88% 0.0 81.63% GQ153546.1
bat SARS coronavirus HKU3-3, complete genome
 14501 21849 89% 0.0 81.63% DQ084200.1
Bat SARS coronavirus HKU3-1, complete genome
 14501 21863 89% 0.0 81.63% DQ022305.2
Bat SARS coronavirus HKU3-6, complete genome
 14495 21797 88% 0.0 81.62% GQ153541.1
Bat SARS coronavirus HKU3-13, complete genome
 14495 21769 88% 0.0 81.63% GQ153548.1
Bat SARS coronavirus HKU3-9, complete genome
 14484 21758 88% 0.0 81.61% GQ153544.1
Bat SARS coronavirus HKU3-10, complete genome
 14484 21758 88% 0.0 81.61% GQ153545.1

2 Responses

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    August 7, 2020 at 6:24 am

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    Reply
  2. zarządzanie leadami says:
    August 27, 2020 at 11:15 pm

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    Reply

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